HL_4V5N_106
3D structure
- PDB id
- 4V5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.6 Å
Loop
- Sequence
- GGGCGACC
- Length
- 8 nucleotides
- Bulged bases
- 4V5N|1|BB|C|88, 4V5N|1|BB|G|89
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5N_106 not in the Motif Atlas
- Geometric match to HL_4V90_032
- Geometric discrepancy: 0.3885
- The information below is about HL_4V90_032
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4V5N|1|BB|G|85
4V5N|1|BB|G|86
4V5N|1|BB|G|87
4V5N|1|BB|C|88
4V5N|1|BB|G|89
4V5N|1|BB|A|90
4V5N|1|BB|C|91
4V5N|1|BB|C|92
Current chains
- Chain BB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain B3
- 50S RIBOSOMAL PROTEIN L30
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
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