HL_4V5O_001

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

4V5O|1|AA|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_001 not in the Motif Atlas

Homologous match to HL_4V88_186

Geometric discrepancy: 0.1902

The information below is about HL_4V88_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.2

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V5O|1|AA|G|7
4V5O|1|AA|U|8
4V5O|1|AA|U|9
4V5O|1|AA|G|10
4V5O|1|AA|A|11
4V5O|1|AA|U|12
4V5O|1|AA|C|13
4V5O|1|AA|C|14
4V5O|1|AA|U|15
4V5O|1|AA|G|16
4V5O|1|AA|C|17

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AE

RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN

Chain AL

40S RIBOSOMAL PROTEIN S12