RNA 3D Hub //

4V5O Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V5O_0011/AA/7:17No text annotation
homologous
HL_4V88_186
NA
HL_4V5O_0021/AA/68:77No text annotation
geometric
HL_2ZNI_001
HL_75660.3
HL_4V5O_0031/AA/148:154GNRA related
homologous
HL_4V88_188
NA
HL_4V5O_0041/AA/185:190No text annotation
geometric
HL_4LFB_004
HL_48417.3
HL_4V5O_0051/AA/226:231GNRA
geometric
HL_3P22_001
HL_37824.5
HL_4V5O_0061/AA/240:247T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_4V5O_0071/AA/269:274No text annotation
geometric
HL_5J7L_143
HL_75660.3
HL_4V5O_0081/AA/321:329GNRA related
homologous
HL_4V88_193
NA
HL_4V5O_0091/AA/359:364No text annotation
homologous
HL_4V88_194
NA
HL_4V5O_0101/AA/384:395No text annotation
homologous
HL_4V88_195
NA
HL_4V5O_0111/AA/405:410UNCG
homologous
HL_4V88_196
NA
HL_4V5O_0121/AA/442:448No text annotation
homologous
HL_4V88_197
NA
HL_4V5O_0131/AA/483:488No text annotation
homologous
HL_4V88_198
NA
HL_4V5O_0141/AA/514:524No text annotation
geometric
HL_5E6M_002
HL_38808.1
HL_4V5O_0151/AA/563:568GNRA variation
homologous
HL_4V88_200
NA
HL_4V5O_0161/AA/652:657No text annotation
geometric
HL_6CZR_075
HL_48417.3
HL_4V5O_0171/AA/759:767No text annotation
geometric
HL_5NFV_001
NA
HL_4V5O_0731/AA/809:823No text annotation
HL_4V5O_0191/AA/878:887No text annotation
homologous
HL_4V88_206
NA
HL_4V5O_0201/AA/915:920GNRA
homologous
HL_4V88_207
NA
HL_4V5O_0211/AA/975:985No text annotation
homologous
HL_4V88_208
NA
HL_4V5O_0711/AA/1030:1038No text annotation
HL_4V5O_0221/AA/1032:1037No text annotation
HL_4V5O_0231/AA/1056:1061GNRA
homologous
HL_4V88_210
NA
HL_4V5O_0241/AA/1094:1099GNRA
homologous
HL_4V88_211
NA
HL_4V5O_0251/AA/1160:1169No text annotation
homologous
HL_4V88_212
NA
HL_4V5O_0741/AA/1210:1219No text annotation
HL_4V5O_0271/AA/1268:1273GNRA
homologous
HL_4V88_214
NA
HL_4V5O_0281/AA/1281:1288No text annotation
homologous
HL_4V88_215
NA
HL_4V5O_0291/AA/1330:1336No text annotation
geometric
HL_3IGI_004
HL_04783.2
HL_4V5O_0301/AA/1364:1375No text annotation
HL_4V5O_0311/AA/1472:1477GNRA
homologous
HL_4V88_218
NA
HL_4V5O_0321/AA/1522:1533No text annotation
homologous
HL_4V88_219
NA
HL_4V5O_0331/AA/1566:1574No text annotation
homologous
HL_4V88_220
NA
HL_4V5O_0341/AA/1660:1665GNRA
geometric
HL_7QR8_001
NA
HL_4V5O_0351/AA/1731:1736GNRA variation
homologous
HL_4V88_222
NA
HL_4V5O_0361/BA/7:17No text annotation
homologous
HL_4V88_186
NA
HL_4V5O_0371/BA/68:77No text annotation
geometric
HL_2ZNI_001
HL_75660.3
HL_4V5O_0381/BA/148:154GNRA related
homologous
HL_4V88_188
NA
HL_4V5O_0391/BA/185:190No text annotation
geometric
HL_4LFB_004
HL_48417.3
HL_4V5O_0401/BA/226:231GNRA
geometric
HL_3P22_001
HL_37824.5
HL_4V5O_0411/BA/240:247T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_4V5O_0421/BA/269:274No text annotation
geometric
HL_5J7L_143
HL_75660.3
HL_4V5O_0431/BA/321:329GNRA related
homologous
HL_4V88_193
NA
HL_4V5O_0441/BA/359:364No text annotation
homologous
HL_4V88_194
NA
HL_4V5O_0451/BA/384:395No text annotation
homologous
HL_4V88_195
NA
HL_4V5O_0461/BA/405:410UNCG
HL_4V5O_0471/BA/442:448No text annotation
homologous
HL_4V88_197
NA
HL_4V5O_0481/BA/483:488No text annotation
homologous
HL_4V88_198
NA
HL_4V5O_0491/BA/514:524No text annotation
geometric
HL_5E6M_002
HL_38808.1
HL_4V5O_0501/BA/563:568GNRA variation
homologous
HL_4V88_200
NA
HL_4V5O_0511/BA/652:657No text annotation
geometric
HL_6CZR_075
HL_48417.3
HL_4V5O_0521/BA/759:767No text annotation
geometric
HL_5NFV_001
NA
HL_4V5O_0751/BA/809:823No text annotation
HL_4V5O_0541/BA/878:887No text annotation
homologous
HL_4V88_206
NA
HL_4V5O_0551/BA/915:920GNRA
homologous
HL_4V88_207
NA
HL_4V5O_0561/BA/975:985No text annotation
homologous
HL_4V88_208
NA
HL_4V5O_0721/BA/1030:1038No text annotation
HL_4V5O_0571/BA/1032:1037No text annotation
HL_4V5O_0581/BA/1056:1061GNRA
homologous
HL_4V88_210
NA
HL_4V5O_0591/BA/1094:1099GNRA
homologous
HL_4V88_211
NA
HL_4V5O_0601/BA/1160:1169No text annotation
homologous
HL_4V88_212
NA
HL_4V5O_0761/BA/1210:1219No text annotation
HL_4V5O_0621/BA/1268:1273GNRA
homologous
HL_4V88_214
NA
HL_4V5O_0631/BA/1281:1288No text annotation
homologous
HL_4V88_215
NA
HL_4V5O_0641/BA/1330:1336No text annotation
geometric
HL_3IGI_004
HL_04783.2
HL_4V5O_0651/BA/1364:1375No text annotation
HL_4V5O_0661/BA/1472:1477GNRA
homologous
HL_4V88_218
NA
HL_4V5O_0671/BA/1522:1533No text annotation
homologous
HL_4V88_219
NA
HL_4V5O_0681/BA/1566:1574No text annotation
homologous
HL_4V88_220
NA
HL_4V5O_0691/BA/1660:1665GNRA
geometric
HL_7QR8_001
NA
HL_4V5O_0701/BA/1731:1736GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_4V5O_018No text annotation
HL_4V5O_026No text annotation
HL_4V5O_053No text annotation
HL_4V5O_061No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V5O_0011/AA/21:23,
1/AA/596:598		Isolated non-canonical cWW pair
geometric
IL_5TBW_034
NA
IL_4V5O_1871/AA/23:25,
1/AA/594:596		No text annotation
IL_4V5O_0031/AA/37:40,
1/AA/458:462		Double sheared
geometric
IL_4WF9_016
IL_09705.13
IL_4V5O_0041/AA/49:51,
1/AA/420:421		Minor groove platform
homologous
IL_4V88_388
NA
IL_4V5O_1881/AA/58:62,
1/AA/83:84		No text annotation
IL_4V5O_0061/AA/63:67,
1/AA/78:82		No text annotation
homologous
IL_4V88_390
NA
IL_4V5O_0071/AA/105:108,
1/AA/293:296		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_4V5O_0081/AA/109:112,
1/AA/291:292		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_4V5O_0091/AA/113:118,
1/AA/286:290		No text annotation
homologous
IL_4V88_393
NA
IL_4V5O_0101/AA/137:143,
1/AA/159:166		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_4V5O_0111/AA/144:146,
1/AA/156:158		Isolated non-canonical cWW contact
homologous
IL_4V88_395
NA
IL_4V5O_0121/AA/181:183,
1/AA/192:193		Single bulged U
geometric
IL_5TBW_093
NA
IL_4V5O_0131/AA/199:201,
1/AA/256:260		Major groove platform with extra cWW
geometric
IL_7RQB_022
NA
IL_4V5O_0141/AA/201:203,
1/AA/254:256		Isolated non-canonical cWW pair
homologous
IL_4V88_398
NA
IL_4V5O_0151/AA/302:307,
1/AA/339:346		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_4V5O_0161/AA/309:314,
1/AA/336:337		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_4V5O_0171/AA/354:356,
1/AA/367:372		No text annotation
homologous
IL_4V88_404
NA
IL_4V5O_0181/AA/380:382,
1/AA/397:399		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_4V5O_0191/AA/431:433,
1/AA/455:456		Single bulged U
geometric
IL_4LFB_014
IL_89505.2
IL_4V5O_0201/AA/435:439,
1/AA/452:453		C-loop
geometric
IL_4LFB_015
IL_03109.1
IL_4V5O_0211/AA/439:440,
1/AA/450:452		Single bulged G
geometric
IL_5J7L_019
IL_00225.11
IL_4V5O_0221/AA/473:474,
1/AA/498:500		Single bulged A
homologous
IL_4V88_409
NA
IL_4V5O_0231/AA/477:478,
1/AA/493:495		Minor groove platform
geometric
IL_4WF9_032
IL_92540.1
IL_4V5O_0241/AA/509:513,
1/AA/525:529		Triple sheared
geometric
IL_5J7L_274
IL_17948.1
IL_4V5O_0251/AA/543:550,
1/AA/581:582		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_4V5O_0261/AA/550:552,
1/AA/580:581		Single bulged U
geometric
IL_6MWN_006
IL_89505.2
IL_4V5O_0271/AA/552:554,
1/AA/579:580		Single bulged A
geometric
IL_6D3P_004
IL_31462.3
IL_4V5O_0281/AA/556:562,
1/AA/569:577		Kink-turn related
homologous
IL_4V88_415
NA
IL_4V5O_0291/AA/610:616,
1/AA/1076:1077		No text annotation
homologous
IL_4V88_416
NA
IL_4V5O_0301/AA/618:620,
1/AA/951:953		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_4V5O_0311/AA/621:625,
1/AA/946:950		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_4V5O_0321/AA/641:643,
1/AA/665:667		Isolated non-canonical cWW pair
geometric
IL_5UNE_007
IL_10289.2
IL_4V5O_1891/AA/647:650,
1/AA/659:661		No text annotation
IL_4V5O_0341/AA/680:686,
1/AA/715:721		No text annotation
IL_4V5O_0371/AA/728:731,
1/AA/784:789		No text annotation
IL_4V5O_1691/AA/731:742,
1/AA/774:784		No text annotation
IL_4V5O_1701/AA/742:759,
1/AA/767:774		No text annotation
IL_4V5O_0381/AA/846:847,
1/AA/936:938		Single bulged U
geometric
IL_6UFH_004
NA
IL_4V5O_1721/AA/849:851,
1/AA/932:934		Isolated non-canonical cWW pair
geometric
IL_3IVK_002
IL_10289.2
IL_4V5O_0401/AA/852:856,
1/AA/928:931		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_4V5O_1731/AA/863:866,
1/AA/902:905		No text annotation
homologous
IL_8P9A_421
IL_54697.2
IL_4V5O_1901/AA/872:877,
1/AA/888:896		No text annotation
IL_4V5O_0431/AA/963:968,
1/AA/992:994		Other IL
geometric
IL_4V88_435
NA
IL_4V5O_0441/AA/968:972,
1/AA/988:992		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_4V5O_0451/AA/1012:1014,
1/AA/1067:1073		No text annotation
homologous
IL_4V88_437
NA
IL_4V5O_0461/AA/1019:1022,
1/AA/1046:1049		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_4V5O_0471/AA/1030:1032,
1/AA/1037:1038		Single stack bend
geometric
IL_5J7L_032
IL_06586.2
IL_4V5O_0481/AA/1083:1090,
1/AA/1102:1107		7x6 Sarcin-Ricin; G-bulge
geometric
IL_1NBS_007
IL_26307.1
IL_4V5O_0491/AA/1091:1093,
1/AA/1100:1101		Major groove platform
geometric
IL_3NKB_002
NA
IL_4V5O_0501/AA/1119:1120,
1/AA/1602:1604		Single bulged A
homologous
IL_4V88_441
NA
IL_4V5O_0511/AA/1122:1124,
1/AA/1599:1600		Single bulged G
homologous
IL_4V88_442
NA
IL_4V5O_0521/AA/1126:1128,
1/AA/1595:1597		Isolated cWH basepair
geometric
IL_4J50_001
IL_10167.3
IL_4V5O_0531/AA/1130:1132,
1/AA/1589:1593		C-loop
homologous
IL_4V88_443
NA
IL_4V5O_0541/AA/1145:1147,
1/AA/1435:1437		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_4V5O_0551/AA/1150:1151,
1/AA/1430:1432		Minor groove platform
homologous
IL_4V88_445
NA
IL_4V5O_0561/AA/1197:1202,
1/AA/1229:1230		No text annotation
IL_4V5O_1751/AA/1197:1205,
1/AA/1224:1230		No text annotation
IL_4V5O_0571/AA/1202:1205,
1/AA/1224:1229		No text annotation
IL_4V5O_0581/AA/1206:1208,
1/AA/1221:1223		No text annotation
homologous
IL_4V88_448
NA
IL_4V5O_0591/AA/1240:1242,
1/AA/1411:1412		Single bulged U
homologous
IL_4V88_449
NA
IL_4V5O_0601/AA/1244:1247,
1/AA/1408:1409		Multiple bulged bases
geometric
IL_1FUF_002
IL_82107.2
IL_4V5O_0611/AA/1248:1250,
1/AA/1401:1407		Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_4V5O_0621/AA/1252:1253,
1/AA/1397:1399		Single bulged A
homologous
IL_4V88_452
NA
IL_4V5O_0631/AA/1262:1264,
1/AA/1295:1297		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_4V5O_0641/AA/1278:1280,
1/AA/1289:1290		Minor groove platform
geometric
IL_4V88_454
NA
IL_4V5O_0651/AA/1311:1314,
1/AA/1353:1355		Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_4V5O_1911/AA/1317:1320,
1/AA/1347:1350		No text annotation
IL_4V5O_0671/AA/1322:1323,
1/AA/1343:1345		Single bulged U
geometric
IL_4V88_407
NA
IL_4V5O_0681/AA/1323:1325,
1/AA/1341:1343		Isolated non-canonical cWW pair
geometric
IL_5VCI_001
IL_10289.2
IL_4V5O_0691/AA/1359:1361,
1/AA/1378:1383		No text annotation
homologous
IL_8C3A_465
IL_76236.1
IL_4V5O_1761/AA/1450:1458,
1/AA/1491:1500		No text annotation
IL_4V5O_0701/AA/1459:1465,
1/AA/1485:1490		No text annotation
IL_4V5O_0711/AA/1469:1470,
1/AA/1479:1481		Major groove platform
geometric
IL_4V9F_082
IL_48076.4
IL_4V5O_0721/AA/1512:1517,
1/AA/1538:1543		No text annotation
geometric
IL_4V88_462
NA
IL_4V5O_0731/AA/1518:1520,
1/AA/1535:1537		Isolated non-canonical cWW pair
geometric
IL_5J7L_259
IL_10289.2
IL_4V5O_0741/AA/1608:1610,
1/AA/1717:1720		No text annotation
homologous
IL_4V88_463
NA
IL_4V5O_0751/AA/1610:1613,
1/AA/1713:1717		No text annotation
geometric
IL_4V88_464
NA
IL_4V5O_0761/AA/1614:1616,
1/AA/1710:1712		Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_4V5O_0771/AA/1616:1618,
1/AA/1707:1710		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
NA
IL_4V5O_0781/AA/1622:1628,
1/AA/1697:1703		No text annotation
IL_4V5O_0791/AA/1635:1638,
1/AA/1687:1690		Tandem non-canonical cWW pairs
geometric
IL_4EYA_003
IL_54697.2
IL_4V5O_0801/AA/1640:1643,
1/AA/1682:1685		Double sheared
homologous
IL_4V88_471
NA
IL_4V5O_0811/AA/1644:1646,
1/AA/1679:1681		Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_10289.2
IL_4V5O_0821/AA/1646:1649,
1/AA/1676:1679		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
NA
IL_4V5O_0831/AA/1649:1653,
1/AA/1672:1676		Triple sheared
homologous
IL_4V88_474
NA
IL_4V5O_0841/BA/21:23,
1/BA/596:598		Isolated non-canonical cWW pair
geometric
IL_5TBW_034
NA
IL_4V5O_1921/BA/23:25,
1/BA/594:596		No text annotation
IL_4V5O_0861/BA/37:40,
1/BA/458:462		Double sheared
IL_4V5O_0871/BA/49:51,
1/BA/420:421		Minor groove platform
IL_4V5O_1931/BA/58:62,
1/BA/83:84		No text annotation
IL_4V5O_0891/BA/63:67,
1/BA/78:82		UAA/GAN
IL_4V5O_0901/BA/105:108,
1/BA/293:296		Tandem non-canonical cWW pairs
IL_4V5O_0911/BA/109:112,
1/BA/291:292		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_4V5O_0921/BA/113:118,
1/BA/286:290		No text annotation
homologous
IL_4V88_393
NA
IL_4V5O_0931/BA/137:143,
1/BA/159:166		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_4V5O_0941/BA/144:146,
1/BA/156:158		Isolated non-canonical cWW contact
homologous
IL_4V88_395
NA
IL_4V5O_0951/BA/181:183,
1/BA/192:193		Single bulged U
geometric
IL_5TBW_093
NA
IL_4V5O_0961/BA/199:201,
1/BA/256:260		Major groove platform with extra cWW
homologous
IL_4V88_397
NA
IL_4V5O_0971/BA/201:203,
1/BA/254:256		Isolated non-canonical cWW pair
geometric
IL_4V88_398
NA
IL_4V5O_0981/BA/302:307,
1/BA/339:346		Kink-turn
IL_4V5O_0991/BA/309:314,
1/BA/336:337		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_4V5O_1001/BA/354:356,
1/BA/367:372		No text annotation
homologous
IL_4V88_404
NA
IL_4V5O_1011/BA/380:382,
1/BA/397:399		Isolated non-canonical cWW pair
IL_4V5O_1021/BA/431:433,
1/BA/455:456		Single bulged U
geometric
IL_4LFB_014
IL_89505.2
IL_4V5O_1031/BA/435:439,
1/BA/452:453		C-loop
IL_4V5O_1041/BA/439:440,
1/BA/450:452		Single bulged G
geometric
IL_5J7L_019
IL_00225.11
IL_4V5O_1051/BA/473:474,
1/BA/498:500		Single bulged A
homologous
IL_4V88_409
NA
IL_4V5O_1061/BA/477:478,
1/BA/493:495		Minor groove platform
geometric
IL_4WF9_032
IL_92540.1
IL_4V5O_1071/BA/509:513,
1/BA/525:529		Triple sheared
IL_4V5O_1081/BA/543:550,
1/BA/581:582		SSU/LSU pseudoknot
IL_4V5O_1091/BA/550:552,
1/BA/580:581		Single bulged U
geometric
IL_6MWN_006
IL_89505.2
IL_4V5O_1101/BA/552:554,
1/BA/579:580		Single bulged A
geometric
IL_6D3P_004
IL_31462.3
IL_4V5O_1111/BA/556:562,
1/BA/569:577		Kink-turn related
homologous
IL_4V88_415
NA
IL_4V5O_1121/BA/610:616,
1/BA/1076:1077		No text annotation
homologous
IL_4V88_416
NA
IL_4V5O_1131/BA/618:620,
1/BA/951:953		Isolated non-canonical cWW pair
IL_4V5O_1141/BA/621:625,
1/BA/946:950		Triple sheared
IL_4V5O_1151/BA/641:643,
1/BA/665:667		Isolated non-canonical cWW pair
geometric
IL_5UNE_007
IL_10289.2
IL_4V5O_1161/BA/647:650,
1/BA/659:661		Isolated non-canonical cWW pair
geometric
IL_4V88_417
NA
IL_4V5O_1171/BA/680:686,
1/BA/715:721		No text annotation
IL_4V5O_1201/BA/728:731,
1/BA/784:789		UAA/GAN variation
IL_4V5O_1791/BA/731:742,
1/BA/774:784		No text annotation
IL_4V5O_1801/BA/742:759,
1/BA/767:774		No text annotation
IL_4V5O_1941/BA/846:847,
1/BA/936:938		No text annotation
IL_4V5O_1821/BA/849:851,
1/BA/932:934		Isolated non-canonical cWW pair
geometric
IL_3IVK_002
IL_10289.2
IL_4V5O_1231/BA/852:856,
1/BA/928:931		Tandem non-canonical cWW pairs
IL_4V5O_1831/BA/863:866,
1/BA/902:905		No text annotation
homologous
IL_8P9A_421
IL_54697.2
IL_4V5O_1951/BA/872:877,
1/BA/888:896		No text annotation
IL_4V5O_1261/BA/963:968,
1/BA/992:994		Other IL
homologous
IL_4V88_435
NA
IL_4V5O_1271/BA/968:972,
1/BA/988:992		tSH-tHW-tHS
IL_4V5O_1281/BA/1012:1014,
1/BA/1067:1073		No text annotation
homologous
IL_4V88_437
NA
IL_4V5O_1291/BA/1019:1022,
1/BA/1046:1049		Tandem non-canonical cWW pairs
IL_4V5O_1301/BA/1030:1032,
1/BA/1037:1038		Single stack bend
geometric
IL_5J7L_032
IL_06586.2
IL_4V5O_1311/BA/1083:1090,
1/BA/1102:1107		7x6 Sarcin-Ricin; G-bulge
IL_4V5O_1321/BA/1091:1093,
1/BA/1100:1101		Major groove platform
geometric
IL_3NKB_002
NA
IL_4V5O_1331/BA/1119:1120,
1/BA/1602:1604		Single bulged A
homologous
IL_4V88_441
NA
IL_4V5O_1341/BA/1122:1124,
1/BA/1599:1600		Single bulged G
homologous
IL_4V88_442
NA
IL_4V5O_1351/BA/1126:1128,
1/BA/1595:1597		Isolated cWH basepair
geometric
IL_4J50_001
IL_10167.3
IL_4V5O_1361/BA/1130:1132,
1/BA/1589:1593		C-loop
IL_4V5O_1371/BA/1145:1147,
1/BA/1435:1437		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_4V5O_1381/BA/1150:1151,
1/BA/1430:1432		Minor groove platform
IL_4V5O_1391/BA/1197:1202,
1/BA/1229:1230		No text annotation
IL_4V5O_1851/BA/1197:1205,
1/BA/1224:1230		No text annotation
IL_4V5O_1401/BA/1202:1205,
1/BA/1224:1229		No text annotation
IL_4V5O_1411/BA/1206:1208,
1/BA/1221:1223		No text annotation
homologous
IL_4V88_448
NA
IL_4V5O_1421/BA/1240:1242,
1/BA/1411:1412		Single bulged U
homologous
IL_4V88_449
NA
IL_4V5O_1431/BA/1244:1247,
1/BA/1408:1409		Multiple bulged bases
geometric
IL_1FUF_002
IL_82107.2
IL_4V5O_1441/BA/1248:1250,
1/BA/1401:1407		Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_4V5O_1451/BA/1252:1253,
1/BA/1397:1399		Single bulged A
homologous
IL_4V88_452
NA
IL_4V5O_1461/BA/1262:1264,
1/BA/1295:1297		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_4V5O_1471/BA/1278:1280,
1/BA/1289:1290		Minor groove platform
IL_4V5O_1481/BA/1311:1314,
1/BA/1353:1355		Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_4V5O_1961/BA/1317:1320,
1/BA/1347:1350		No text annotation
IL_4V5O_1501/BA/1322:1323,
1/BA/1343:1345		Single bulged U
geometric
IL_4V88_407
NA
IL_4V5O_1511/BA/1323:1325,
1/BA/1341:1343		Isolated non-canonical cWW pair
geometric
IL_5VCI_001
IL_10289.2
IL_4V5O_1521/BA/1359:1361,
1/BA/1378:1383		No text annotation
homologous
IL_8C3A_465
IL_76236.1
IL_4V5O_1861/BA/1450:1458,
1/BA/1491:1500		No text annotation
IL_4V5O_1531/BA/1459:1465,
1/BA/1485:1490		No text annotation
IL_4V5O_1541/BA/1469:1470,
1/BA/1479:1481		Major groove platform
geometric
IL_4V9F_082
IL_48076.4
IL_4V5O_1551/BA/1512:1517,
1/BA/1538:1543		No text annotation
homologous
IL_4V88_462
NA
IL_4V5O_1561/BA/1518:1520,
1/BA/1535:1537		Isolated non-canonical cWW pair
geometric
IL_5J7L_259
IL_10289.2
IL_4V5O_1571/BA/1608:1610,
1/BA/1717:1720		No text annotation
geometric
IL_5J7L_058
IL_61438.2
IL_4V5O_1581/BA/1610:1613,
1/BA/1713:1717		No text annotation
homologous
IL_4V88_464
NA
IL_4V5O_1591/BA/1614:1616,
1/BA/1710:1712		Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_4V5O_1601/BA/1616:1618,
1/BA/1707:1710		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
NA
IL_4V5O_1611/BA/1622:1628,
1/BA/1697:1703		No text annotation
IL_4V5O_1621/BA/1635:1638,
1/BA/1687:1690		Tandem non-canonical cWW pairs
IL_4V5O_1631/BA/1640:1643,
1/BA/1682:1685		Double sheared
IL_4V5O_1641/BA/1644:1646,
1/BA/1679:1681		Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_10289.2
IL_4V5O_1651/BA/1646:1649,
1/BA/1676:1679		Tandem non-canonical cWW pairs
IL_4V5O_1661/BA/1649:1653,
1/BA/1672:1676		Triple sheared

Problematic loops

#loop idProblemSequence
IL_4V5O_002Tandem non-canonical cWW pairs
IL_4V5O_005No text annotation
IL_4V5O_167No text annotation
IL_4V5O_033Tandem non-canonical cWW pairs
IL_4V5O_035No text annotation
IL_4V5O_168No text annotation
IL_4V5O_036Single stack bend
IL_4V5O_171Isolated non-canonical cWW pair
IL_4V5O_039Tandem non-canonical cWW pairs
IL_4V5O_041Triple non-canonical cWW pairs
IL_4V5O_042Kink-turn related
IL_4V5O_174Isolated non-canonical cWW pair
IL_4V5O_066No text annotation
IL_4V5O_085Tandem non-canonical cWW pairs
IL_4V5O_088No text annotation
IL_4V5O_177No text annotation
IL_4V5O_118No text annotation
IL_4V5O_178No text annotation
IL_4V5O_119Single stack bend
IL_4V5O_181Isolated non-canonical cWW pair
IL_4V5O_121Isolated non-canonical cWW pair
IL_4V5O_122Tandem non-canonical cWW pairs
IL_4V5O_124Triple non-canonical cWW pairs
IL_4V5O_125Kink-turn related
IL_4V5O_184Isolated non-canonical cWW pair
IL_4V5O_149No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V5O_0011/AA/40:47,
1/AA/423:431,
1/AA/456:458		No text annotation
homologous
J3_8C3A_083
NA
J3_4V5O_0021/AA/121:132,
1/AA/263:264,
1/AA/279:283		No text annotation
J3_4V5O_0271/AA/207:223,
1/AA/234:240,
1/AA/247:250		No text annotation
J3_4V5O_0031/AA/627:629,
1/AA/839:844,
1/AA/940:944		No text annotation
homologous
J3_8C3A_034
NA
J3_4V5O_0041/AA/859:862,
1/AA/906:914,
1/AA/921:925		No text annotation
homologous
J3_4V88_033
NA
J3_4V5O_0281/AA/1015:1017,
1/AA/1051:1055,
1/AA/1062:1066		No text annotation
J3_4V5O_0061/AA/1133:1136,
1/AA/1553:1559,
1/AA/1581:1588		No text annotation
J3_4V5O_0071/AA/1140:1143,
1/AA/1439:1441,
1/AA/1546:1549		No text annotation
homologous
J3_4V88_036
NA
J3_4V5O_0081/AA/1152:1159,
1/AA/1170:1181,
1/AA/1425:1429		No text annotation
homologous
J3_8C3A_040
NA
J3_4V5O_0091/AA/1187:1192,
1/AA/1235:1239,
1/AA/1413:1419		No text annotation
homologous
J3_4V88_038
NA
J3_4V5O_0101/AA/1255:1260,
1/AA/1299:1304,
1/AA/1390:1395		No text annotation
homologous
J3_4V88_039
NA
J3_4V5O_0111/AA/1265:1266,
1/AA/1275:1278,
1/AA/1290:1294		No text annotation
homologous
J3_8P9A_081
NA
J3_4V5O_0121/AA/1308:1310,
1/AA/1356:1359,
1/AA/1383:1386		No text annotation
homologous
J3_4V88_040
NA
J3_4V5O_0301/AA/1308:1310,
1/AA/1356:1361,
1/AA/1378:1386		No text annotation
homologous
J3_8C3A_086
NA
J3_4V5O_0131/AA/1441:1445,
1/AA/1505:1512,
1/AA/1543:1546		No text annotation
homologous
J3_8C3A_044
NA
J3_4V5O_0141/BA/40:47,
1/BA/423:431,
1/BA/456:458		No text annotation
homologous
J3_8C3A_083
NA
J3_4V5O_0151/BA/121:132,
1/BA/263:264,
1/BA/279:283		No text annotation
J3_4V5O_0311/BA/207:223,
1/BA/234:240,
1/BA/247:250		No text annotation
J3_4V5O_0161/BA/627:629,
1/BA/839:844,
1/BA/940:944		No text annotation
homologous
J3_8C3A_034
NA
J3_4V5O_0171/BA/859:862,
1/BA/906:914,
1/BA/921:925		No text annotation
homologous
J3_4V88_033
NA
J3_4V5O_0321/BA/1015:1017,
1/BA/1051:1055,
1/BA/1062:1066		No text annotation
J3_4V5O_0191/BA/1133:1136,
1/BA/1553:1559,
1/BA/1581:1588		No text annotation
J3_4V5O_0201/BA/1140:1143,
1/BA/1439:1441,
1/BA/1546:1549		No text annotation
homologous
J3_4V88_036
NA
J3_4V5O_0211/BA/1152:1159,
1/BA/1170:1181,
1/BA/1425:1429		No text annotation
homologous
J3_8C3A_040
NA
J3_4V5O_0221/BA/1187:1192,
1/BA/1235:1239,
1/BA/1413:1419		No text annotation
homologous
J3_4V88_038
NA
J3_4V5O_0231/BA/1255:1260,
1/BA/1299:1304,
1/BA/1390:1395		No text annotation
homologous
J3_4V88_039
NA
J3_4V5O_0241/BA/1265:1266,
1/BA/1275:1278,
1/BA/1290:1294		No text annotation
homologous
J3_8P9A_081
NA
J3_4V5O_0251/BA/1308:1310,
1/BA/1356:1359,
1/BA/1383:1386		No text annotation
homologous
J3_4V88_040
NA
J3_4V5O_0341/BA/1308:1310,
1/BA/1356:1361,
1/BA/1378:1386		No text annotation
homologous
J3_8C3A_086
NA
J3_4V5O_0261/BA/1441:1445,
1/BA/1505:1512,
1/BA/1543:1546		No text annotation
homologous
J3_8C3A_044
NA
J4_4V5O_0011/AA/95:103,
1/AA/298:300,
1/AA/348:352,
1/AA/374:375		No text annotation
homologous
J4_8P9A_021
NA
J4_4V5O_0021/AA/132:136,
1/AA/167:177,
1/AA/197:199,
1/AA/260:263		No text annotation
J4_4V5O_0031/AA/616:618,
1/AA/953:958,
1/AA/999:1010,
1/AA/1075:1076		No text annotation
homologous
J4_8C3A_022
NA
J4_4V5O_0041/BA/95:103,
1/BA/298:300,
1/BA/348:352,
1/BA/374:375		No text annotation
homologous
J4_8P9A_021
NA
J4_4V5O_0051/BA/132:136,
1/BA/167:177,
1/BA/197:199,
1/BA/260:263		No text annotation
J4_4V5O_0061/BA/616:618,
1/BA/953:958,
1/BA/999:1010,
1/BA/1075:1076		No text annotation
homologous
J4_8C3A_022
NA
J5_4V5O_0011/AA/30:34,
1/AA/465:471,
1/AA/502:513,
1/AA/525:539,
1/AA/586:589		No text annotation
J5_4V5O_0021/AA/53:56,
1/AA/86:93,
1/AA/377:379,
1/AA/400:403,
1/AA/412:418		No text annotation
J5_4V5O_0071/AA/630:635,
1/AA/673:686,
1/AA/715:727,
1/AA/790:800,
1/AA/832:838		No text annotation
J5_4V5O_0041/BA/30:34,
1/BA/465:471,
1/BA/502:513,
1/BA/525:539,
1/BA/586:589		No text annotation
J5_4V5O_0051/BA/53:56,
1/BA/86:93,
1/BA/377:379,
1/BA/400:403,
1/BA/412:418		No text annotation
J5_4V5O_0081/BA/630:635,
1/BA/673:686,
1/BA/715:727,
1/BA/790:800,
1/BA/832:838		No text annotation

Problematic loops

#loop idProblemSequence
J3_4V5O_005No text annotation
J3_4V5O_029No text annotation
J3_4V5O_018No text annotation
J3_4V5O_033No text annotation
J5_4V5O_003No text annotation
J5_4V5O_006No text annotation

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