HL_4V5O_011

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V5O|1|AA|A|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_011 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2017

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V5O|1|AA|C|405
4V5O|1|AA|U|406
4V5O|1|AA|A|407
4V5O|1|AA|C|408
4V5O|1|AA|G|409
4V5O|1|AA|G|410

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AY

RPS6E