HL_4V5O_017

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GGUUUUAGC

Length

9 nucleotides

Bulged bases

4V5O|1|AA|U|762, 4V5O|1|AA|U|763, 4V5O|1|AA|A|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_017 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1773

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V5O|1|AA|G|759
4V5O|1|AA|G|760
4V5O|1|AA|U|761
4V5O|1|AA|U|762
4V5O|1|AA|U|763
4V5O|1|AA|U|764
4V5O|1|AA|A|765
4V5O|1|AA|G|766
4V5O|1|AA|C|767

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AD

RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN

Chain AP

RPS24E

Chain AW

40S RIBOSOMAL PROTEIN S4