HL_4V5O_027

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_027 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1174

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V5O|1|AA|A|1268
4V5O|1|AA|G|1269
4V5O|1|AA|U|1270
4V5O|1|AA|G|1271
4V5O|1|AA|A|1272
4V5O|1|AA|U|1273

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AB

RPS0E

Chain AE

RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN

Chain AZ

RPS21E