HL_4V5O_029

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UAAAUAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_029 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.2862

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5O|1|AA|U|1330
4V5O|1|AA|A|1331
4V5O|1|AA|A|1332
4V5O|1|AA|A|1333
4V5O|1|AA|U|1334
4V5O|1|AA|A|1335
4V5O|1|AA|A|1336

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AI

RPS16E, 40S RIBOSOMAL PROTEIN RPS16E

Chain AT

RPS19E