HL_4V5O_033

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

4V5O|1|AA|G|1573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_033 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.4561

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5O|1|AA|G|1566
4V5O|1|AA|U|1567
4V5O|1|AA|C|1568
4V5O|1|AA|A|1569
4V5O|1|AA|U|1570
4V5O|1|AA|C|1571
4V5O|1|AA|A|1572
4V5O|1|AA|G|1573
4V5O|1|AA|C|1574

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AI

RPS16E, 40S RIBOSOMAL PROTEIN RPS16E

Chain AJ

RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN

Chain AN

RPS29E

Chain AT

RPS19E