3D structure

PDB id
4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
UGUAUUGGA
Length
9 nucleotides
Bulged bases
4V5O|1|BA|G|328
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_44933.2
Basepair signature
cWW-tSH-R-R-R-R
Number of instances in this motif group
23

Unit IDs

4V5O|1|BA|U|321
4V5O|1|BA|G|322
4V5O|1|BA|U|323
4V5O|1|BA|A|324
4V5O|1|BA|U|325
4V5O|1|BA|U|326
4V5O|1|BA|G|327
4V5O|1|BA|G|328
4V5O|1|BA|A|329

Current chains

Chain BA
18S RRNA

Nearby chains

Chain B2
40S RIBOSOMAL PROTEIN S8
Chain BQ
RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2846 s