3D structure

PDB id
4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
AGAAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_54105.2
Basepair signature
cWW-tSH-R-R
Number of instances in this motif group
298

Unit IDs

4V5O|1|BA|A|1056
4V5O|1|BA|G|1057
4V5O|1|BA|A|1058
4V5O|1|BA|A|1059
4V5O|1|BA|A|1060
4V5O|1|BA|U|1061

Current chains

Chain BA
18S RRNA

Nearby chains

Chain B5
RIBOSOMAL PROTEIN S26E CONTAINING PROTEIN
Chain BE
RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN
Chain BH
RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN

Coloring options:

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