3D structure

PDB id
4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
AGUGAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_54105.2
Basepair signature
cWW-tSH-R-R
Number of instances in this motif group
298

Unit IDs

4V5O|1|BA|A|1268
4V5O|1|BA|G|1269
4V5O|1|BA|U|1270
4V5O|1|BA|G|1271
4V5O|1|BA|A|1272
4V5O|1|BA|U|1273

Current chains

Chain BA
18S RRNA

Nearby chains

Chain BB
RPS0E
Chain BE
RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN
Chain BZ
RPS21E

Coloring options:

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