3D structure

PDB id
4V5O (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
GUGCAAUAAGCC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_37723.1
Basepair signature
cWW-R-R-tSH-R-R-R-R-R
Number of instances in this motif group
1

Unit IDs

4V5O|1|BA|G|1364
4V5O|1|BA|U|1365
4V5O|1|BA|G|1366
4V5O|1|BA|C|1367
4V5O|1|BA|A|1368
4V5O|1|BA|A|1369
4V5O|1|BA|U|1370
4V5O|1|BA|A|1371
4V5O|1|BA|A|1372
4V5O|1|BA|G|1373
4V5O|1|BA|C|1374
4V5O|1|BA|C|1375

Current chains

Chain BA
18S RRNA

Nearby chains

Chain BG
RIBOSOMAL PROTEIN S7 CONTAINING PROTEIN
Chain BR
RACK1
Chain BV
RPS17E

Coloring options:

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