HL_4V5O_075

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AUUUUAUUGGUUCUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_075 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.4706

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V5O|1|BA|A|809
4V5O|1|BA|U|810
4V5O|1|BA|U|811
4V5O|1|BA|U|812
4V5O|1|BA|U|813
4V5O|1|BA|A|814
4V5O|1|BA|U|815
4V5O|1|BA|U|816
4V5O|1|BA|G|817
4V5O|1|BA|G|818
4V5O|1|BA|U|819
4V5O|1|BA|U|820
4V5O|1|BA|C|821
4V5O|1|BA|U|822
4V5O|1|BA|U|823

Current chains

Chain BA

18S RRNA

Nearby chains

Chain BQ

RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN