HL_4V5O_076

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

4V5O|1|BA|G|1215, 4V5O|1|BA|G|1217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_076 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.2517

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5O|1|BA|A|1210
4V5O|1|BA|U|1211
4V5O|1|BA|U|1212
4V5O|1|BA|G|1213
4V5O|1|BA|A|1214
4V5O|1|BA|G|1215
4V5O|1|BA|A|1216
4V5O|1|BA|G|1217
4V5O|1|BA|C|1218
4V5O|1|BA|U|1219

Current chains

Chain BA

18S RRNA

Nearby chains

Chain B9

RPS31E

Chain BN

RPS29E

Chain BS

RPS15E