HL_4V5P_064

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4V5P|1|BA|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5P_064 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3298

The information below is about HL_2NUE_001

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5P|1|BA|U|779
4V5P|1|BA|G|780
4V5P|1|BA|A|781
4V5P|1|BA|A|782
4V5P|1|BA|A|783
4V5P|1|BA|A|784
4V5P|1|BA|G|785

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2