HL_4V5Q_020

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Q_020 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.0868

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V5Q|1|AA|C|897
4V5Q|1|AA|G|898
4V5Q|1|AA|C|899
4V5Q|1|AA|A|900
4V5Q|1|AA|A|901
4V5Q|1|AA|G|902

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA