HL_4V5Q_028
3D structure
- PDB id
- 4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUGCAACCCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5Q_028 not in the Motif Atlas
- Geometric match to HL_4V88_219
- Geometric discrepancy: 0.2241
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V5Q|1|AA|U|1313
4V5Q|1|AA|C|1314
4V5Q|1|AA|U|1315
4V5Q|1|AA|G|1316
4V5Q|1|AA|C|1317
4V5Q|1|AA|A|1318
4V5Q|1|AA|A|1319
4V5Q|1|AA|C|1320
4V5Q|1|AA|C|1321
4V5Q|1|AA|C|1322
4V5Q|1|AA|G|1323
4V5Q|1|AA|A|1324
Current chains
- Chain AA
- 16S RRNA
Nearby chains
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AN
- 30S RIBOSOMAL PROTEIN S14
- Chain AS
- 30S RIBOSOMAL PROTEIN S19
- Chain AU
- 30S RIBOSOMAL PROTEIN THX
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