HL_4V5R_177

3D structure

PDB id

4V5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGCCCACCAGCCU

Length

14 nucleotides

Bulged bases

4V5R|1|DA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5R_177 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3475

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5R|1|DA|G|881
4V5R|1|DA|G|882
4V5R|1|DA|G|883
4V5R|1|DA|C|884
4V5R|1|DA|C|885
4V5R|1|DA|C|886
4V5R|1|DA|A|887
4V5R|1|DA|C|888
4V5R|1|DA|C|889
4V5R|1|DA|A|890
4V5R|1|DA|G|892
4V5R|1|DA|C|893
4V5R|1|DA|C|894
4V5R|1|DA|U|895

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CS

30S RIBOSOMAL PROTEIN S19

Chain DZ

50S RIBOSOMAL PROTEIN L25