HL_4V5R_244
3D structure
- PDB id
- 4V5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGGGAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5R_244 not in the Motif Atlas
- Geometric match to HL_2IL9_007
- Geometric discrepancy: 0.3281
- The information below is about HL_2IL9_007
- Detailed Annotation
- GNRA with extra near cWW
- Broad Annotation
- GNRA with extra near cWW
- Motif group
- HL_82182.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
4V5R|1|DA|C|486
4V5R|1|DA|C|487
4V5R|1|DA|G|488
4V5R|1|DA|G|489
4V5R|1|DA|G|491
4V5R|1|DA|A|492
4V5R|1|DA|G|493
4V5R|1|DA|G|494
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain DW
- 50S RIBOSOMAL PROTEIN L22
Coloring options: