HL_4V5S_032
3D structure
- PDB id
- 4V5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 4V5S|1|AV|C|17, 4V5S|1|AV|G|18, 4V5S|1|AV|G|19, 4V5S|1|AV|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5S_032 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.127
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5S|1|AV|C|13
4V5S|1|AV|A|14
4V5S|1|AV|G|15
4V5S|1|AV|U|16
4V5S|1|AV|C|17
4V5S|1|AV|G|18
4V5S|1|AV|G|19
4V5S|1|AV|U|20
4V5S|1|AV|A|21
4V5S|1|AV|G|22
Current chains
- Chain AV
- E-SITE TRNA PHE OR P-SITE TRNA PHE
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S RIBOSOMAL PROTEIN L5
Coloring options: