HL_6PMO_003

3D structure

PDB id

6PMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of the Geobacillus kaustophilus glyQ T-box riboswitch discriminator domain in complex with tRNA-Gly

Experimental method

X-RAY DIFFRACTION

Resolution

2.66 Å

Loop

Sequence

CAGUGGAG*G

Length

9 nucleotides

Bulged bases

6PMO|1|B|U|16, 6PMO|1|B|G|17, 6PMO|1|B|G|18

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PMO_003 not in the Motif Atlas

Homologous match to HL_7YSE_001

Geometric discrepancy: 0.0722

The information below is about HL_7YSE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PMO|1|B|C|13
6PMO|1|B|A|14
6PMO|1|B|G|15
6PMO|1|B|U|16
6PMO|1|B|G|17
6PMO|1|B|G|18
6PMO|1|B|A|20
6PMO|1|B|G|21
*
6PMO|1|B|G|21

Current chains

Chain B

tRNA-Gly

Nearby chains