HL_4V5S_044

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5S_044 not in the Motif Atlas

Homologous match to HL_9DFE_004

Geometric discrepancy: 0.2772

The information below is about HL_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71391.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5S|1|BA|G|139
4V5S|1|BA|G|139|||A
4V5S|1|BA|G|140
4V5S|1|BA|A|141
4V5S|1|BA|A|142
4V5S|1|BA|C|142|||A

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L29

Chain BX

50S RIBOSOMAL PROTEIN L23