HL_4V5S_177

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5S_177 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.2209

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V5S|1|DA|G|883
4V5S|1|DA|C|884
4V5S|1|DA|C|885
4V5S|1|DA|C|886
4V5S|1|DA|A|887
4V5S|1|DA|C|888
4V5S|1|DA|C|889
4V5S|1|DA|A|890
4V5S|1|DA|G|892
4V5S|1|DA|C|893

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CS

30S RIBOSOMAL PROTEIN S19