HL_4V5S_183
3D structure
- PDB id
- 4V5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5S_183 not in the Motif Atlas
- Homologous match to HL_7A0S_032
- Geometric discrepancy: 0.1252
- The information below is about HL_7A0S_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4V5S|1|DA|G|1281
4V5S|1|DA|U|1282
4V5S|1|DA|G|1283
4V5S|1|DA|A|1284
4V5S|1|DA|G|1285
4V5S|1|DA|A|1286
4V5S|1|DA|A|1287
4V5S|1|DA|U|1288
4V5S|1|DA|C|1289
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain DR
- 50S RIBOSOMAL PROTEIN L17
- Chain DW
- 50S RIBOSOMAL PROTEIN L22
Coloring options: