HL_4V5S_228

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUCAA(H2U)(H2U)GG(H2U)AGAA

Length

14 nucleotides

Bulged bases

4V5S|1|AY|H2U|16, 4V5S|1|AY|H2U|17, 4V5S|1|AY|G|18, 4V5S|1|AY|G|19, 4V5S|1|AY|H2U|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5S_228 not in the Motif Atlas

Homologous match to HL_4V9I_038

Geometric discrepancy: 0.3755

The information below is about HL_4V9I_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68572.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V5S|1|AY|U|11
4V5S|1|AY|U|12
4V5S|1|AY|C|13
4V5S|1|AY|A|14
4V5S|1|AY|A|15
4V5S|1|AY|H2U|16
4V5S|1|AY|H2U|17
4V5S|1|AY|G|18
4V5S|1|AY|G|19
4V5S|1|AY|H2U|20
4V5S|1|AY|A|21
4V5S|1|AY|G|22
4V5S|1|AY|A|23
4V5S|1|AY|A|24

Current chains

Chain AY

A-SITE TRNA G24A TRP-TRNA TRP

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA