Motif HL_68572.1 Version HL_68572.1 of this group appears in releases 3.89 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-7 | 4-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4GCW_001 | 4GCW | 0.6648 | 5 | B | TRNA(THR) | C | 11 | U | 12 | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | A | 23 | G | 24 | cWW | ncWW | ncWS |
| 2 | HL_4V9I_038 | 4V9I | 0.0000 | 5 | AY | tRNA | C | 11 | G | 12 | G | 13 | A | 14 | G | 15 | G | 21 | A | 22 | A | 23 | G | 24 | ncWW | ||
| 3 | HL_7KJT_001 | 7KJT | 0.3994 | 5 | A | tRNA | U | 11 | C | 12 | A | 13 | G | 14 | U | 15 | A | 21 | G | 22 | A | 23 | G | 24 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAGCAGGUAGAG | 1 |
| CGGAGCGGCUGAAG | 1 |
| UCAGUCUGGCAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGCAGGUAGA | 1 |
| GGAGCGGCUGAA | 1 |
| CAGUCUGGCAGA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.40 | Avg 0.39 | Max 0.69
Coloring options: