HL_4V5Y_050

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V5Y|1|BB|U|546, 4V5Y|1|BB|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_050 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.306

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5Y|1|BB|G|543
4V5Y|1|BB|C|544
4V5Y|1|BB|U|545
4V5Y|1|BB|U|546
4V5Y|1|BB|A|547
4V5Y|1|BB|G|548
4V5Y|1|BB|G|549
4V5Y|1|BB|C|550

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BR

50S ribosomal protein L21