HL_4V5Y_118

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_118 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.1039

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V5Y|1|CA|C|689
4V5Y|1|CA|G|690
4V5Y|1|CA|G|691
4V5Y|1|CA|U|692
4V5Y|1|CA|G|693
4V5Y|1|CA|A|694
4V5Y|1|CA|A|695
4V5Y|1|CA|A|696
4V5Y|1|CA|U|697
4V5Y|1|CA|G|698

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DB

Large subunit ribosomal RNA; LSU rRNA