HL_4V5Y_167

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

4V5Y|1|DB|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_167 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3979

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

4V5Y|1|DB|C|1172
4V5Y|1|DB|U|1173
4V5Y|1|DB|U|1174
4V5Y|1|DB|A|1175
4V5Y|1|DB|U|1176
4V5Y|1|DB|G|1177

Current chains

Chain DB

23S rRNA

Nearby chains