HL_4V5Y_187

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V5Y|1|DB|A|2030, 4V5Y|1|DB|A|2031, 4V5Y|1|DB|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_187 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1545

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V5Y|1|DB|G|2027
4V5Y|1|DB|U|2028
4V5Y|1|DB|G|2029
4V5Y|1|DB|A|2030
4V5Y|1|DB|A|2031
4V5Y|1|DB|G|2032
4V5Y|1|DB|A|2033
4V5Y|1|DB|U|2034
4V5Y|1|DB|G|2035
4V5Y|1|DB|C|2036

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DR

50S ribosomal protein L21