HL_4V61_011

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCACGG

Length

6 nucleotides

Bulged bases

4V61|1|AA|A|392

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_011 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.2357

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V61|1|AA|C|390
4V61|1|AA|C|391
4V61|1|AA|A|392
4V61|1|AA|C|393
4V61|1|AA|G|394
4V61|1|AA|G|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

Ribosomal Protein S3

Chain AD

Ribosomal Protein S4