4V61 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V61_001 | No text annotation | ||
| HL_4V61_002 | No text annotation | ||
| HL_4V61_099 | No text annotation | ||
| HL_4V61_003 | GNRA | ||
| HL_4V61_004 | GNRA | ||
| HL_4V61_005 | No text annotation | ||
| HL_4V61_006 | GNRA related | ||
| HL_4V61_007 | GNRA | ||
| HL_4V61_008 | No text annotation | ||
| HL_4V61_009 | UNCG | ||
| HL_4V61_010 | GNRA | ||
| HL_4V61_011 | UNCG | ||
| HL_4V61_012 | No text annotation | ||
| HL_4V61_013 | No text annotation | ||
| HL_4V61_014 | GNRA-like with tWH | ||
| HL_4V61_015 | No text annotation | ||
| HL_4V61_016 | GNRA | ||
| HL_4V61_017 | No text annotation | ||
| HL_4V61_018 | No text annotation | ||
| HL_4V61_019 | GNRA | ||
| HL_4V61_020 | GNRA | ||
| HL_4V61_100 | No text annotation | ||
| HL_4V61_021 | No text annotation | ||
| HL_4V61_022 | GNRA | ||
| HL_4V61_023 | UNCG | ||
| HL_4V61_024 | GNRA | ||
| HL_4V61_025 | T-loop related | ||
| HL_4V61_101 | No text annotation | ||
| HL_4V61_026 | No text annotation | ||
| HL_4V61_027 | GNRA | ||
| HL_4V61_028 | GNRA | ||
| HL_4V61_102 | No text annotation | ||
| HL_4V61_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V61_030 | No text annotation | ||
| HL_4V61_031 | UNCG | ||
| HL_4V61_032 | No text annotation | ||
| HL_4V61_103 | GNRA | ||
| HL_4V61_104 | No text annotation | ||
| HL_4V61_121 | No text annotation | ||
| HL_4V61_033 | No text annotation | ||
| HL_4V61_105 | No text annotation | ||
| HL_4V61_122 | No text annotation | ||
| HL_4V61_034 | No text annotation | ||
| HL_4V61_035 | No text annotation | ||
| HL_4V61_036 | No text annotation | ||
| HL_4V61_037 | No text annotation | ||
| HL_4V61_038 | No text annotation | ||
| HL_4V61_106 | No text annotation | ||
| HL_4V61_123 | No text annotation | ||
| HL_4V61_039 | No text annotation | ||
| HL_4V61_040 | No text annotation | ||
| HL_4V61_041 | T-loop with unstacked turn | ||
| HL_4V61_042 | No text annotation | ||
| HL_4V61_107 | No text annotation | ||
| HL_4V61_043 | Pseudoknot geometry | ||
| HL_4V61_044 | GNRA | ||
| HL_4V61_045 | No text annotation | ||
| HL_4V61_046 | No text annotation | ||
| HL_4V61_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V61_048 | No text annotation | ||
| HL_4V61_108 | tRNA anticodon loop | ||
| HL_4V61_049 | GNRA | ||
| HL_4V61_050 | GNRA | ||
| HL_4V61_051 | GNRA with tandem sheared | ||
| HL_4V61_109 | No text annotation | ||
| HL_4V61_052 | No text annotation | ||
| HL_4V61_053 | No text annotation | ||
| HL_4V61_124 | No text annotation | ||
| HL_4V61_054 | No text annotation | ||
| HL_4V61_110 | No text annotation | ||
| HL_4V61_055 | No text annotation | ||
| HL_4V61_111 | No text annotation | ||
| HL_4V61_125 | No text annotation | ||
| HL_4V61_056 | GNRA | ||
| HL_4V61_112 | No text annotation | ||
| HL_4V61_057 | No text annotation | ||
| HL_4V61_113 | No text annotation | ||
| HL_4V61_058 | No text annotation | ||
| HL_4V61_059 | GNRA with tandem sheared | ||
| HL_4V61_060 | No text annotation | ||
| HL_4V61_061 | GNRA | ||
| HL_4V61_062 | T-loop with 2 stacked bulged bases | ||
| HL_4V61_063 | No text annotation | ||
| HL_4V61_114 | Pseudoknot geometry with 3' bulge | ||
| HL_4V61_064 | GNRA | ||
| HL_4V61_065 | No text annotation | ||
| HL_4V61_066 | No text annotation | ||
| HL_4V61_067 | No text annotation | ||
| HL_4V61_068 | UNCG | ||
| HL_4V61_069 | No text annotation | ||
| HL_4V61_070 | GNRA | ||
| HL_4V61_071 | No text annotation | ||
| HL_4V61_115 | No text annotation | ||
| HL_4V61_072 | No text annotation | ||
| HL_4V61_073 | No text annotation | ||
| HL_4V61_074 | No text annotation | ||
| HL_4V61_075 | GNRA related | ||
| HL_4V61_076 | GNRA related | ||
| HL_4V61_077 | No text annotation | ||
| HL_4V61_126 | No text annotation | ||
| HL_4V61_116 | No text annotation | ||
| HL_4V61_078 | No text annotation | ||
| HL_4V61_127 | No text annotation | ||
| HL_4V61_079 | No text annotation | ||
| HL_4V61_080 | No text annotation | ||
| HL_4V61_081 | No text annotation | ||
| HL_4V61_082 | No text annotation | ||
| HL_4V61_128 | LSU P loop | ||
| HL_4V61_083 | No text annotation | ||
| HL_4V61_117 | No text annotation | ||
| HL_4V61_084 | No text annotation | ||
| HL_4V61_129 | No text annotation | ||
| HL_4V61_085 | GNRA with extra cWW | ||
| HL_4V61_086 | GNRA | ||
| HL_4V61_087 | No text annotation | ||
| HL_4V61_088 | No text annotation | ||
| HL_4V61_089 | No text annotation | ||
| HL_4V61_090 | No text annotation | ||
| HL_4V61_091 | GNRA | ||
| HL_4V61_118 | No text annotation | ||
| HL_4V61_092 | GNRA | ||
| HL_4V61_093 | Ribsomal LSU H95 | ||
| HL_4V61_119 | No text annotation | ||
| HL_4V61_094 | No text annotation | ||
| HL_4V61_095 | No text annotation | ||
| HL_4V61_120 | No text annotation | ||
| HL_4V61_096 | No text annotation | ||
| HL_4V61_130 | No text annotation | ||
| HL_4V61_097 | No text annotation | ||
| HL_4V61_098 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V61_001 | Isolated non-canonical cWW pair | ||
| IL_4V61_208 | Single bulged G | ||
| IL_4V61_002 | Single bulged A | ||
| IL_4V61_003 | No text annotation | ||
| IL_4V61_004 | Minor groove platform | ||
| IL_4V61_005 | Multiple bulged bases | ||
| IL_4V61_006 | Minor groove platform with extra cWW | ||
| IL_4V61_007 | Isolated non-canonical cWW pair | ||
| IL_4V61_008 | Isolated non-canonical cWW pair | ||
| IL_4V61_009 | No text annotation | ||
| IL_4V61_010 | tWH-tWH-tHW-tHW | ||
| IL_4V61_011 | Kink-turn with non-sequential stacking | ||
| IL_4V61_209 | No text annotation | ||
| IL_4V61_012 | No text annotation | ||
| IL_4V61_013 | C-loop | ||
| IL_4V61_014 | C-loop | ||
| IL_4V61_015 | Single bulged G | ||
| IL_4V61_210 | No text annotation | ||
| IL_4V61_016 | No text annotation | ||
| IL_4V61_017 | tSH-tHW-tWW | ||
| IL_4V61_018 | SSU/LSU pseudoknot | ||
| IL_4V61_157 | No text annotation | ||
| IL_4V61_019 | Kink-turn related | ||
| IL_4V61_020 | tSH-tWH-tHS | ||
| IL_4V61_021 | Tandem non-canonical cWW pairs | ||
| IL_4V61_022 | Major groove platform | ||
| IL_4V61_023 | Major groove minor groove platform; mini C-loop | ||
| IL_4V61_024 | No text annotation | ||
| IL_4V61_025 | No text annotation | ||
| IL_4V61_026 | Tandem non-canonical cWW pairs | ||
| IL_4V61_027 | Kink-turn | ||
| IL_4V61_028 | Left turn | ||
| IL_4V61_029 | tSH-tWH-tHS | ||
| IL_4V61_030 | No text annotation | ||
| IL_4V61_031 | Isolated non-canonical cWW pair | ||
| IL_4V61_032 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V61_033 | Single bulged A | ||
| IL_4V61_034 | Single bulged G | ||
| IL_4V61_158 | No text annotation | ||
| IL_4V61_035 | No text annotation | ||
| IL_4V61_159 | No text annotation | ||
| IL_4V61_036 | Minor groove platform | ||
| IL_4V61_160 | No text annotation | ||
| IL_4V61_037 | Single stack bend | ||
| IL_4V61_038 | Single bulged U | ||
| IL_4V61_039 | No text annotation | ||
| IL_4V61_040 | Minor groove platform | ||
| IL_4V61_041 | Single bulged A | ||
| IL_4V61_042 | Isolated non-canonical cWW pair | ||
| IL_4V61_043 | No text annotation | ||
| IL_4V61_044 | No text annotation | ||
| IL_4V61_045 | No text annotation | ||
| IL_4V61_046 | No text annotation | ||
| IL_4V61_047 | 180 degree turn | ||
| IL_4V61_048 | Double sheared with non-canonical cWW | ||
| IL_4V61_049 | No text annotation | ||
| IL_4V61_050 | No text annotation | ||
| IL_4V61_051 | No text annotation | ||
| IL_4V61_052 | Isolated non-canonical cWW pair | ||
| IL_4V61_053 | Not an internal loop | ||
| IL_4V61_054 | Isolated non-canonical cWW pair | ||
| IL_4V61_055 | Double sheared | ||
| IL_4V61_056 | Isolated non-canonical cWW pair | ||
| IL_4V61_057 | Triple sheared related | ||
| IL_4V61_058 | Isolated non-canonical cWW pair | ||
| IL_4V61_059 | Single bulged A | ||
| IL_4V61_060 | No text annotation | ||
| IL_4V61_061 | Single bulged A | ||
| IL_4V61_161 | No text annotation | ||
| IL_4V61_062 | Minor groove platform | ||
| IL_4V61_063 | No text annotation | ||
| IL_4V61_064 | Single stack bend | ||
| IL_4V61_162 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4V61_065 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V61_066 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V61_163 | Isolated non-canonical cWW pair | ||
| IL_4V61_067 | Tandem non-canonical cWW pairs | ||
| IL_4V61_068 | No text annotation | ||
| IL_4V61_211 | No text annotation | ||
| IL_4V61_164 | No text annotation | ||
| IL_4V61_069 | Isolated non-canonical cWW pair | ||
| IL_4V61_070 | No text annotation | ||
| IL_4V61_071 | No text annotation | ||
| IL_4V61_165 | AAA cross-strand stack | ||
| IL_4V61_072 | Isolated non-canonical cWW pair | ||
| IL_4V61_073 | tHW-tHW cross-strand stack | ||
| IL_4V61_166 | No text annotation | ||
| IL_4V61_074 | Isolated non-canonical cWW pair | ||
| IL_4V61_075 | Single bulged G | ||
| IL_4V61_167 | No text annotation | ||
| IL_4V61_076 | Triple sheared | ||
| IL_4V61_168 | No text annotation | ||
| IL_4V61_077 | No text annotation | ||
| IL_4V61_212 | Major groove platform with extra cWW | ||
| IL_4V61_078 | No text annotation | ||
| IL_4V61_169 | No text annotation | ||
| IL_4V61_079 | Single stack bend | ||
| IL_4V61_213 | No text annotation | ||
| IL_4V61_170 | No text annotation | ||
| IL_4V61_080 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V61_081 | No text annotation | ||
| IL_4V61_171 | Isolated cWS basepair | ||
| IL_4V61_082 | Tandem non-canonical cWW pairs | ||
| IL_4V61_083 | No text annotation | ||
| IL_4V61_172 | Isolated non-canonical cWW pair | ||
| IL_4V61_214 | Single bulged C | ||
| IL_4V61_084 | Isolated non-canonical cWW pair | ||
| IL_4V61_085 | UAA/GAN with extra cWW | ||
| IL_4V61_086 | Isolated non-canonical cWW pair | ||
| IL_4V61_173 | No text annotation | ||
| IL_4V61_174 | No text annotation | ||
| IL_4V61_087 | No text annotation | ||
| IL_4V61_088 | No text annotation | ||
| IL_4V61_175 | No text annotation | ||
| IL_4V61_089 | No text annotation | ||
| IL_4V61_090 | Isolated non-canonical cWW pair | ||
| IL_4V61_176 | No text annotation | ||
| IL_4V61_177 | No text annotation | ||
| IL_4V61_091 | No text annotation | ||
| IL_4V61_092 | No text annotation | ||
| IL_4V61_093 | No text annotation | ||
| IL_4V61_094 | No text annotation | ||
| IL_4V61_095 | No text annotation | ||
| IL_4V61_096 | No text annotation | ||
| IL_4V61_097 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V61_098 | C-loop | ||
| IL_4V61_099 | UAA/GAN | ||
| IL_4V61_100 | No text annotation | ||
| IL_4V61_178 | No text annotation | ||
| IL_4V61_215 | No text annotation | ||
| IL_4V61_101 | Tandem non-canonical cWW pairs | ||
| IL_4V61_102 | No text annotation | ||
| IL_4V61_179 | No text annotation | ||
| IL_4V61_103 | No text annotation | ||
| IL_4V61_180 | No text annotation | ||
| IL_4V61_216 | No text annotation | ||
| IL_4V61_104 | No text annotation | ||
| IL_4V61_217 | Tandem non-canonical cWW pairs | ||
| IL_4V61_181 | No text annotation | ||
| IL_4V61_105 | No text annotation | ||
| IL_4V61_218 | tSH-tHW | ||
| IL_4V61_106 | No text annotation | ||
| IL_4V61_182 | No text annotation | ||
| IL_4V61_107 | No text annotation | ||
| IL_4V61_108 | No text annotation | ||
| IL_4V61_219 | UAA/GAN variation | ||
| IL_4V61_109 | Triple sheared related | ||
| IL_4V61_110 | No text annotation | ||
| IL_4V61_111 | Isolated tWW turn | ||
| IL_4V61_112 | No text annotation | ||
| IL_4V61_113 | tSH-tSH-tHH-tHS | ||
| IL_4V61_114 | No text annotation | ||
| IL_4V61_183 | No text annotation | ||
| IL_4V61_220 | Single bulged A | ||
| IL_4V61_115 | Kink-turn related | ||
| IL_4V61_184 | No text annotation | ||
| IL_4V61_116 | Minor groove platform, major groove intercalation | ||
| IL_4V61_185 | Major groove intercalation | ||
| IL_4V61_117 | Isolated non-canonical cWW with bulges | ||
| IL_4V61_118 | Minor groove platform | ||
| IL_4V61_119 | UAA/GAN with extra stack | ||
| IL_4V61_186 | No text annotation | ||
| IL_4V61_120 | Double sheared | ||
| IL_4V61_187 | No text annotation | ||
| IL_4V61_188 | No text annotation | ||
| IL_4V61_121 | No text annotation | ||
| IL_4V61_122 | No text annotation | ||
| IL_4V61_123 | No text annotation | ||
| IL_4V61_221 | No text annotation | ||
| IL_4V61_124 | No text annotation | ||
| IL_4V61_222 | No text annotation | ||
| IL_4V61_125 | Tandem non-canonical cWW pairs | ||
| IL_4V61_223 | No text annotation | ||
| IL_4V61_126 | No text annotation | ||
| IL_4V61_224 | Minor groove platform | ||
| IL_4V61_127 | No text annotation | ||
| IL_4V61_189 | No text annotation | ||
| IL_4V61_128 | No text annotation | ||
| IL_4V61_190 | Tandem non-canonical cWW pairs | ||
| IL_4V61_225 | Isolated non-canonical cWW pair | ||
| IL_4V61_129 | No text annotation | ||
| IL_4V61_226 | No text annotation | ||
| IL_4V61_191 | No text annotation | ||
| IL_4V61_130 | No text annotation | ||
| IL_4V61_192 | No text annotation | ||
| IL_4V61_131 | No text annotation | ||
| IL_4V61_193 | No text annotation | ||
| IL_4V61_132 | No text annotation | ||
| IL_4V61_194 | No text annotation | ||
| IL_4V61_195 | No text annotation | ||
| IL_4V61_133 | No text annotation | ||
| IL_4V61_196 | No text annotation | ||
| IL_4V61_134 | Double sheared | ||
| IL_4V61_135 | Single bulged G | ||
| IL_4V61_197 | No text annotation | ||
| IL_4V61_227 | No text annotation | ||
| IL_4V61_136 | No text annotation | ||
| IL_4V61_137 | Double sheared with non-canonical cWW | ||
| IL_4V61_198 | No text annotation | ||
| IL_4V61_138 | Major groove platform | ||
| IL_4V61_139 | Isolated non-canonical cWW with bulges | ||
| IL_4V61_140 | Isolated non-canonical cWW contact | ||
| IL_4V61_141 | No text annotation | ||
| IL_4V61_228 | Major groove platform with intercalation | ||
| IL_4V61_199 | No text annotation | ||
| IL_4V61_200 | No text annotation | ||
| IL_4V61_229 | No text annotation | ||
| IL_4V61_142 | Single bulged A | ||
| IL_4V61_143 | tSH-tHS-tHW | ||
| IL_4V61_144 | Isolated non-canonical cWW pair | ||
| IL_4V61_145 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V61_201 | C-loop | ||
| IL_4V61_146 | C-loop with extra cWW pair | ||
| IL_4V61_147 | UAA/GAN related, with intercalation | ||
| IL_4V61_148 | Multiple bulged bases | ||
| IL_4V61_202 | No text annotation | ||
| IL_4V61_149 | UAA/GAN with extra cWW | ||
| IL_4V61_150 | Isolated non-canonical cWW pair | ||
| IL_4V61_230 | Major groove intercalation | ||
| IL_4V61_203 | Isolated non-canonical cWW with bulges | ||
| IL_4V61_204 | No text annotation | ||
| IL_4V61_231 | No text annotation | ||
| IL_4V61_151 | No text annotation | ||
| IL_4V61_152 | No text annotation | ||
| IL_4V61_153 | No text annotation | ||
| IL_4V61_205 | No text annotation | ||
| IL_4V61_154 | Single bulged C | ||
| IL_4V61_206 | No text annotation | ||
| IL_4V61_232 | No text annotation | ||
| IL_4V61_155 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V61_156 | tHS double platform | ||
| IL_4V61_207 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V61_001 | No text annotation | ||
| J3_4V61_022 | No text annotation | ||
| J3_4V61_002 | No text annotation | ||
| J3_4V61_033 | No text annotation | ||
| J3_4V61_023 | No text annotation | ||
| J3_4V61_003 | No text annotation | ||
| J3_4V61_024 | No text annotation | ||
| J3_4V61_004 | No text annotation | ||
| J3_4V61_005 | No text annotation | ||
| J3_4V61_006 | No text annotation | ||
| J3_4V61_007 | No text annotation | ||
| J3_4V61_008 | No text annotation | ||
| J3_4V61_009 | No text annotation | ||
| J3_4V61_034 | No text annotation | ||
| J3_4V61_010 | No text annotation | ||
| J3_4V61_025 | No text annotation | ||
| J3_4V61_011 | No text annotation | ||
| J3_4V61_012 | No text annotation | ||
| J3_4V61_026 | No text annotation | ||
| J3_4V61_035 | No text annotation | ||
| J3_4V61_027 | No text annotation | ||
| J3_4V61_013 | No text annotation | ||
| J3_4V61_028 | No text annotation | ||
| J3_4V61_036 | No text annotation | ||
| J3_4V61_014 | No text annotation | ||
| J3_4V61_029 | No text annotation | ||
| J3_4V61_015 | No text annotation | ||
| J3_4V61_030 | No text annotation | ||
| J3_4V61_016 | No text annotation | ||
| J3_4V61_017 | No text annotation | ||
| J3_4V61_018 | No text annotation | ||
| J3_4V61_019 | No text annotation | ||
| J3_4V61_037 | No text annotation | ||
| J3_4V61_031 | No text annotation | ||
| J3_4V61_020 | No text annotation | ||
| J3_4V61_021 | No text annotation | ||
| J3_4V61_032 | No text annotation | ||
| J3_4V61_038 | No text annotation | ||
| J4_4V61_001 | No text annotation | ||
| J4_4V61_002 | No text annotation | ||
| J4_4V61_003 | No text annotation | ||
| J4_4V61_004 | No text annotation | ||
| J4_4V61_005 | No text annotation | ||
| J4_4V61_013 | No text annotation | ||
| J4_4V61_006 | No text annotation | ||
| J4_4V61_007 | No text annotation | ||
| J4_4V61_014 | No text annotation | ||
| J4_4V61_015 | No text annotation | ||
| J4_4V61_008 | No text annotation | ||
| J4_4V61_009 | No text annotation | ||
| J4_4V61_010 | No text annotation | ||
| J4_4V61_011 | No text annotation | ||
| J4_4V61_016 | No text annotation | ||
| J4_4V61_017 | No text annotation | ||
| J4_4V61_012 | No text annotation | ||
| J5_4V61_001 | No text annotation | ||
| J5_4V61_002 | No text annotation | ||
| J5_4V61_003 | No text annotation | ||
| J5_4V61_006 | No text annotation | ||
| J5_4V61_004 | No text annotation | ||
| J5_4V61_007 | No text annotation | ||
| J5_4V61_005 | No text annotation | ||
| J7_4V61_002 | No text annotation | ||
| J7_4V61_001 | No text annotation | ||
| J8_4V61_001 | No text annotation | ||
| J8_4V61_002 | No text annotation |
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