HL_4V61_014

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1192

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V61|1|AA|G|565
4V61|1|AA|C|566
4V61|1|AA|U|567
4V61|1|AA|C|568
4V61|1|AA|A|569
4V61|1|AA|A|570
4V61|1|AA|C|571

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

Ribosomal Protein S4

Chain AP

Ribosomal Protein S16