HL_4V61_029

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_029 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.2093

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V61|1|AA|C|1262
4V61|1|AA|U|1263
4V61|1|AA|G|1264
4V61|1|AA|C|1265
4V61|1|AA|A|1266
4V61|1|AA|A|1267
4V61|1|AA|C|1268
4V61|1|AA|U|1269
4V61|1|AA|C|1270
4V61|1|AA|G|1271

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AM

Ribosomal Protein S13

Chain AN

Ribosomal Protein S14

Chain AS

Ribosomal Protein S19