HL_4V61_034

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUCAAC

Length

6 nucleotides

Bulged bases

4V61|1|BA|C|123

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_034 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1279

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V61|1|BA|G|121
4V61|1|BA|U|122
4V61|1|BA|C|123
4V61|1|BA|A|124
4V61|1|BA|A|125
4V61|1|BA|C|126

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

Ribosomal Protein L34

Chain BV

Ribosomal Protein L23