HL_4V61_039

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_039 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.2599

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

4V61|1|BA|C|231
4V61|1|BA|G|232
4V61|1|BA|G|233
4V61|1|BA|C|234
4V61|1|BA|G|235
4V61|1|BA|A|236
4V61|1|BA|G|237

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

Ribosomal Protein L35

Chain BN

Ribosomal Protein L15

Chain BY

Ribosomal Protein L28