HL_4V61_045

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCAUCG

Length

6 nucleotides

Bulged bases

4V61|1|BA|U|502

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_045 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.3677

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V61|1|BA|C|499
4V61|1|BA|C|500
4V61|1|BA|A|501
4V61|1|BA|U|502
4V61|1|BA|C|503
4V61|1|BA|G|504

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

Ribosomal Protein L22

Chain BW

Ribosomal Protein L24