HL_4V61_047

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UGUUGAAGAA

Length

10 nucleotides

Bulged bases

4V61|1|BA|A|584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_047 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.3215

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

4V61|1|BA|U|576
4V61|1|BA|G|577
4V61|1|BA|U|578
4V61|1|BA|U|579
4V61|1|BA|G|580
4V61|1|BA|A|581
4V61|1|BA|A|582
4V61|1|BA|G|583
4V61|1|BA|A|584
4V61|1|BA|A|585

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

Ribosomal Protein L32

Chain BN

Ribosomal Protein L15

Chain BT

Ribosomal Protein L21