HL_4V61_048

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGAACCCAC

Length

9 nucleotides

Bulged bases

4V61|1|BA|A|623

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_048 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.4699

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V61|1|BA|G|621
4V61|1|BA|G|622
4V61|1|BA|A|623
4V61|1|BA|A|624
4V61|1|BA|C|625
4V61|1|BA|C|626
4V61|1|BA|C|627
4V61|1|BA|A|628
4V61|1|BA|C|629

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

Ribosomal Protein L4