HL_4V61_052

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UGUUGAAGAA

Length

10 nucleotides

Bulged bases

4V61|1|BA|U|758, 4V61|1|BA|G|762, 4V61|1|BA|A|763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_052 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.303

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

4V61|1|BA|U|755
4V61|1|BA|G|756
4V61|1|BA|U|757
4V61|1|BA|U|758
4V61|1|BA|G|759
4V61|1|BA|A|760
4V61|1|BA|A|761
4V61|1|BA|G|762
4V61|1|BA|A|763
4V61|1|BA|A|764

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

Ribosomal Protein L32

Chain BF

Ribosomal Protein L3

Chain BU

Ribosomal Protein L22