HL_4V61_054

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUUGAGGC

Length

8 nucleotides

Bulged bases

4V61|1|BA|U|838, 4V61|1|BA|G|841

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_054 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3221

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V61|1|BA|G|836
4V61|1|BA|U|837
4V61|1|BA|U|838
4V61|1|BA|G|839
4V61|1|BA|A|840
4V61|1|BA|G|841
4V61|1|BA|G|842
4V61|1|BA|C|843

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

Ribosomal Protein L15

Chain BX

Ribosomal Protein L27