HL_4V61_056

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

4V61|1|BA|U|986, 4V61|1|BA|G|989

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_056 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.305

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

4V61|1|BA|G|983
4V61|1|BA|G|984
4V61|1|BA|A|985
4V61|1|BA|U|986
4V61|1|BA|A|987
4V61|1|BA|A|988
4V61|1|BA|G|989
4V61|1|BA|C|990

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BO

Ribosomal Protein L16