HL_4V61_057

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_057 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.4144

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V61|1|BA|G|1006
4V61|1|BA|A|1007
4V61|1|BA|A|1008
4V61|1|BA|A|1009
4V61|1|BA|C|1010
4V61|1|BA|A|1011
4V61|1|BA|G|1012
4V61|1|BA|C|1013

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

Ribosomal Protein L20

Chain BT

Ribosomal Protein L21