HL_4V61_065

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUGAAUAUUC

Length

10 nucleotides

Bulged bases

4V61|1|BA|U|1417

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_065 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.33

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V61|1|BA|G|1410
4V61|1|BA|U|1411
4V61|1|BA|G|1412
4V61|1|BA|A|1413
4V61|1|BA|A|1414
4V61|1|BA|U|1415
4V61|1|BA|A|1416
4V61|1|BA|U|1417
4V61|1|BA|U|1418
4V61|1|BA|C|1419

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BV

Ribosomal Protein L23