HL_4V61_066

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

AAAGAUGGUUAU

Length

12 nucleotides

Bulged bases

4V61|1|BA|A|1474, 4V61|1|BA|U|1475

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_066 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.1066

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V61|1|BA|A|1470
4V61|1|BA|A|1471
4V61|1|BA|A|1472
4V61|1|BA|G|1473
4V61|1|BA|A|1474
4V61|1|BA|U|1475
4V61|1|BA|G|1476
4V61|1|BA|G|1477
4V61|1|BA|U|1478
4V61|1|BA|U|1479
4V61|1|BA|A|1480
4V61|1|BA|U|1481

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

4.8S rRNA

Chain BP

Ribosomal Protein L17