HL_4V61_069

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V61|1|BA|A|1650, 4V61|1|BA|A|1652, 4V61|1|BA|A|1654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_069 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.377

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V61|1|BA|C|1648
4V61|1|BA|G|1649
4V61|1|BA|A|1650
4V61|1|BA|C|1651
4V61|1|BA|A|1652
4V61|1|BA|C|1653
4V61|1|BA|A|1654
4V61|1|BA|G|1655

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

Ribosomal Protein L22