HL_4V61_085

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCCACCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_085 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.1863

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V61|1|BA|C|2372
4V61|1|BA|C|2373
4V61|1|BA|C|2374
4V61|1|BA|A|2375
4V61|1|BA|C|2376
4V61|1|BA|C|2377
4V61|1|BA|C|2378
4V61|1|BA|G|2379

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

Ribosomal Protein L35

Chain BN

Ribosomal Protein L15

Chain BX

Ribosomal Protein L27