HL_4V61_088

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_088 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2055

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V61|1|BA|A|2488
4V61|1|BA|G|2489
4V61|1|BA|U|2490
4V61|1|BA|U|2491
4V61|1|BA|C|2492
4V61|1|BA|A|2493
4V61|1|BA|C|2494
4V61|1|BA|A|2495
4V61|1|BA|U|2496

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

Ribosomal Protein L36

Chain BI

Ribosomal Protein L6

Chain BO

Ribosomal Protein L16