HL_4V61_094

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V61|1|BA|G|2769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_094 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.2577

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

4V61|1|BA|C|2763
4V61|1|BA|U|2764
4V61|1|BA|G|2765
4V61|1|BA|A|2766
4V61|1|BA|A|2767
4V61|1|BA|A|2768
4V61|1|BA|G|2769
4V61|1|BA|C|2770
4V61|1|BA|A|2771
4V61|1|BA|U|2772
4V61|1|BA|C|2773
4V61|1|BA|U|2774
4V61|1|BA|A|2775
4V61|1|BA|A|2776
4V61|1|BA|G|2777

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

Ribosomal Protein L36

Chain BI

Ribosomal Protein L6

Chain BL

Ribosomal Protein L13