HL_4V61_097
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- CGAGACGAG
- Length
- 9 nucleotides
- Bulged bases
- 4V61|1|BC|G|13
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V61_097 not in the Motif Atlas
- Geometric match to HL_5J7L_201
- Geometric discrepancy: 0.2231
- The information below is about HL_5J7L_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.6
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V61|1|BC|C|12
4V61|1|BC|G|13
4V61|1|BC|A|14
4V61|1|BC|G|15
4V61|1|BC|A|16
4V61|1|BC|C|17
4V61|1|BC|G|18
4V61|1|BC|A|19
4V61|1|BC|G|20
Current chains
- Chain BC
- 4.8S rRNA
Nearby chains
- Chain B2
- Ribosomal Protein L32
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- Ribosomal Protein L3
- Chain BP
- Ribosomal Protein L17
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